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Oxld1 oxidoreductase like domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66431, updated on 17-Aug-2024

Summary

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Official Symbol
Oxld1provided by MGI
Official Full Name
oxidoreductase like domain containing 1provided by MGI
Primary source
MGI:MGI:1913681
See related
Ensembl:ENSMUSG00000039670 AllianceGenome:MGI:1913681
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810049H13Rik
Summary
Located in mitochondrion. Orthologous to human OXLD1 (oxidoreductase like domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 28.4), kidney adult (RPKM 16.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Oxld1 in Genome Data Viewer
Location:
11 E2; 11 84.15 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (120347427..120348896, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (120456601..120458070, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 10 Neighboring gene phosphodiesterase 6G, cGMP-specific, rod, gamma Neighboring gene coiled-coil domain containing 137 Neighboring gene STARR-positive B cell enhancer ABC_E260 Neighboring gene ADP-ribosylation factor-like 16 Neighboring gene HGF-regulated tyrosine kinase substrate

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
oxidoreductase-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356385.1 → NP_001343314.1  oxidoreductase-like domain-containing protein 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. It encodes isoform 2, which lacks an internal segment and is shorter, compared to isoform 1.
    Source sequence(s)
    AI157209, BC172027, CJ147000
    UniProtKB/TrEMBL
    B7ZWF9
    Conserved Domains (1) summary
    pfam09791
    Location:123 → 151
    Oxidored-like; Oxidoreductase-like protein, N-terminal

  2. NM_025560.3 → NP_079836.1  oxidoreductase-like domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_079836.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AI157209, AK007842, CJ147000
    Consensus CDS
    CCDS25735.1
    UniProtKB/Swiss-Prot
    Q9CR10
    UniProtKB/TrEMBL
    B2RVP3
    Related
    ENSMUSP00000036860.3, ENSMUST00000044007.3
    Conserved Domains (1) summary
    pfam09791
    Location:133 → 161
    Oxidored-like; Oxidoreductase-like protein, N-terminal

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    120347427..120348896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CR10.1 GenPept UniProtKB/Swiss-Prot:Q9CR10

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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