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LOC6636926 delta-sarcoglycan [ Drosophila virilis ]

Gene ID: 6636926, updated on 10-May-2024

Summary

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Gene symbol
LOC6636926
Gene description
delta-sarcoglycan
Locus tag
Dvir_GJ19465
See related
EnsemblRapid:LOC6636926
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ19465; GJ19465-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6636926 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587440.1 (611109..623004, complement)

NW_022587440.1Genomic Context describing neighboring genes Neighboring gene protein a6 Neighboring gene trypsin-3 Neighboring gene uncharacterized LOC6636925 Neighboring gene uncharacterized LOC116650007

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587440 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
Dvir\GJ19465
Dvir\GJ19465-PA
dvir_GLEANR_436

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587440.1 Reference DvirRS2

    Range
    611109..623004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032433329.1 → XP_032289220.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    B4MGX9
    Related
    XP_032289220.1, XM_032433329.1
    Conserved Domains (1) summary
    pfam04790
    Location:100 → 358
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_032433328.1 → XP_032289219.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    B4MGX9
    Related
    XP_032289219.1, XM_032433328.1
    Conserved Domains (1) summary
    pfam04790
    Location:100 → 358
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_002060346.3 → XP_002060382.1  delta-sarcoglycan

    See identical proteins and their annotated locations for XP_002060382.1

    UniProtKB/TrEMBL
    B4MGX9
    Related
    XP_002060382.1, XM_002060346.3
    Conserved Domains (1) summary
    pfam04790
    Location:100 → 358
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

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