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LOC6635573 irregular chiasm C-roughest protein [ Drosophila virilis ]

Gene ID: 6635573, updated on 10-May-2024

Summary

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Gene symbol
LOC6635573
Gene description
irregular chiasm C-roughest protein
Locus tag
Dvir_GJ15275
See related
EnsemblRapid:LOC6635573
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
rst; rst-PA; GJ15275; Dvir\rst; GJ15275-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6635573 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587575.1 (11423957..11449221, complement)

NW_022587575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6635571 Neighboring gene estradiol 17-beta-dehydrogenase 8 Neighboring gene uncharacterized LOC116652043 Neighboring gene merozoite surface antigen 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587575 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interspecies comparison of a gene pair with partially redundant function: the rst and kirre genes in D. virilis and D. melanogaster. Strünkelnberg M, et al. J Mol Evol, 2003 Feb. PMID 12574866
  2. A framework physical map of Drosophila virilis based on P1 clones: applications in genome evolution. Vieira J, et al. Chromosoma, 1997 Jul. PMID 9215559
  3. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein
Names
Dvir\GJ15275
Dvir\GJ15275-PA
Dvir\rst-PA
cell adhesion molecule RST
dvir_GLEANR_15595

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587575.1 Reference DvirRS2

    Range
    11423957..11449221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002058892.3 → XP_002058928.1  irregular chiasm C-roughest protein

    See identical proteins and their annotated locations for XP_002058928.1

    UniProtKB/TrEMBL
    B4MCS5, Q8I063
    Related
    XP_002058928.1, XM_002058892.3
    Conserved Domains (6) summary
    cd00096
    Location:63 → 128
    Ig; Immunoglobulin domain
    cd05758
    Location:441 → 537
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    smart00408
    Location:373 → 423
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:448 → 537
    IG_like; Immunoglobulin like
    pfam08205
    Location:153 → 243
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:290 → 342
    Ig_3; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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