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Riiad1 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 66353, updated on 2-Nov-2024

Summary

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Official Symbol
Riiad1provided by MGI
Official Full Name
regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1provided by MGI
Primary source
MGI:MGI:1913603
See related
Ensembl:ENSMUSG00000028139 AllianceGenome:MGI:1913603
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ncrna00166; 2310007A19Rik
Summary
Is expressed in several structures, including adrenal gland; brain; gut; reproductive system; and respiratory system. Orthologous to human RIIAD1 (regulatory subunit of type II PKA R-subunit domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 30.8), CNS E14 (RPKM 3.3) and 4 other tissues See more
Orthologs
human all
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Genomic context

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See Riiad1 in Genome Data Viewer
Location:
3 F2.1; 3 40.71 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94372291..94387661, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94464984..94480326, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S2-like Neighboring gene STARR-positive B cell enhancer mm9_chr3:94260392-94260693 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene CUGBP, Elav-like family member 3 Neighboring gene sorting nexin family member 27 Neighboring gene STARR-seq mESC enhancer starr_08351 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94386567-94386676 Neighboring gene translation machinery-associated protein 7 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Uncoupling of bait-protein expression from the prey protein environment adds versatility for cell and tissue interaction proteomics and reveals a complex of CARP-1 and the PKA Cbeta1 subunit. Erlbruch A, et al. Proteomics, 2010 Aug. PMID 20564261
  2. Tissue expression patterns identify mouse cilia genes. McClintock TS, et al. Physiol Genomics, 2008 Jan 17. PMID 17971504
  3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC129400

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RIIa domain-containing protein 1
Names
RIIa domain-containing protein C1orf230 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417792.1 → NP_001404721.1  RIIa domain-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122808

  2. NM_025506.2 → NP_079782.1  RIIa domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_079782.1

    Status: PROVISIONAL

    Source sequence(s)
    AK009192, AK019569
    Consensus CDS
    CCDS38535.1
    UniProtKB/Swiss-Prot
    Q3KNY5, Q9D7J0
    Related
    ENSMUSP00000029785.3, ENSMUST00000029785.4
    Conserved Domains (1) summary
    cl02594
    Location:75 → 99
    DD_R_PKA; Dimerization/Docking domain of the Regulatory subunit of cAMP-dependent protein kinase and similar domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    94372291..94387661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163224.1 → XP_036019117.1  RIIa domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q3KNY5, Q9D7J0
    Conserved Domains (1) summary
    cl02594
    Location:75 → 99
    DD_R_PKA; Dimerization/Docking domain of the Regulatory subunit of cAMP-dependent protein kinase and similar domains
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3KNY5.2 GenPept UniProtKB/Swiss-Prot:Q3KNY5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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