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sws patatin like phospholipase domain containing sws [ Drosophila virilis ]

Gene ID: 6633725, updated on 15-May-2024

Summary

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Gene symbol
sws
Gene description
patatin like phospholipase domain containing sws
Locus tag
Dvir_GJ16892
See related
EnsemblRapid:LOC6633725
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ16892; GJ16892-PB; GJ16892-PC
Orthologs
fruit fly all
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Genomic context

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See sws in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587408.1 (2238400..2250462)

NW_022587408.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase 1 Neighboring gene fascin domain-containing protein singed Neighboring gene DM7 family protein GG17591 Neighboring gene Ubr3 ubiquitin ligase Neighboring gene uncharacterized LOC6633805

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587408 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuropathy target esterase sws
Names
Dvir\GJ16892
Dvir\GJ16892-PB
Dvir\GJ16892-PC
Swiss cheese
dvir_GLEANR_17395

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587408.1 Reference DvirRS2

    Range
    2238400..2250462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015170180.2 → XP_015025666.1  neuropathy target esterase sws isoform X2

    UniProtKB/Swiss-Prot
    B4M709
    UniProtKB/TrEMBL
    A0A0Q9W766
    Related
    XP_015025666.1, XM_015170180.2
    Conserved Domains (4) summary
    cd07225
    Location:910 → 1215
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    COG0664
    Location:168 → 310
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    COG1752
    Location:915 → 1201
    RssA; Predicted acylesterase/phospholipase RssA, containd patatin domain [General function prediction only]
    cd00038
    Location:596 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  2. XM_002057054.3 → XP_002057090.2  neuropathy target esterase sws isoform X1

    UniProtKB/Swiss-Prot
    B4M709
    Related
    XP_002057090.2, XM_002057054.3
    Conserved Domains (4) summary
    cd07225
    Location:910 → 1215
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    COG0664
    Location:168 → 310
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    COG1752
    Location:915 → 1201
    RssA; Predicted acylesterase/phospholipase RssA, containd patatin domain [General function prediction only]
    cd00038
    Location:596 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B4M709.1 GenPept UniProtKB/Swiss-Prot:B4M709

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