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1700001K19Rik RIKEN cDNA 1700001K19 gene [ Mus musculus (house mouse) ]

Gene ID: 66323, updated on 17-Aug-2024

Summary

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Official Symbol
1700001K19Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700001K19 geneprovided by MGI
Primary source
MGI:MGI:1913573
See related
Ensembl:ENSMUSG00000056508 AllianceGenome:MGI:1913573
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 131.7) See more
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Genomic context

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See 1700001K19Rik in Genome Data Viewer
Location:
12 F1; 12 60.74 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (110634122..110649086, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110667688..110682662, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B930059L03 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111829680-111829789 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:111829792-111829979 Neighboring gene predicted gene, 35558 Neighboring gene dynein cytoplasmic 1 heavy chain 1 Neighboring gene STARR-seq mESC enhancer starr_33294 Neighboring gene predicted gene, 53768 Neighboring gene STARR-positive B cell enhancer mm9_chr12:111934512-111934812 Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Breslow DK, et al. Nat Genet, 2018 Mar. PMID 29459677, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC58197

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC66323

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025488.2 → NP_079764.2  uncharacterized protein LOC66323

    See identical proteins and their annotated locations for NP_079764.2

    Status: VALIDATED

    Source sequence(s)
    AK005606, AK006098
    Consensus CDS
    CCDS49175.1
    UniProtKB/TrEMBL
    Q80ZT1
    Related
    ENSMUSP00000068238.6, ENSMUST00000070659.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    110634122..110649086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246852.2 → XP_030102712.1  uncharacterized protein LOC66323 isoform X4

    UniProtKB/TrEMBL
    Q80ZT1

  2. XM_006516149.5 → XP_006516212.1  uncharacterized protein LOC66323 isoform X3

    See identical proteins and their annotated locations for XP_006516212.1

  3. XM_030246851.2 → XP_030102711.1  uncharacterized protein LOC66323 isoform X2

  4. XM_006516148.5 → XP_006516211.1  uncharacterized protein LOC66323 isoform X3

    See identical proteins and their annotated locations for XP_006516211.1

  5. XM_006516147.4 → XP_006516210.1  uncharacterized protein LOC66323 isoform X2

  6. XM_036157559.1 → XP_036013452.1  uncharacterized protein LOC66323 isoform X4

    UniProtKB/TrEMBL
    Q80ZT1

  7. XM_030246854.1 → XP_030102714.1  uncharacterized protein LOC66323 isoform X4

    UniProtKB/TrEMBL
    Q80ZT1

  8. XM_036157558.1 → XP_036013451.1  uncharacterized protein LOC66323 isoform X2

  9. XM_011244159.4 → XP_011242461.1  uncharacterized protein LOC66323 isoform X1

    See identical proteins and their annotated locations for XP_011242461.1

  10. XM_006516144.5 → XP_006516207.1  uncharacterized protein LOC66323 isoform X1

    See identical proteins and their annotated locations for XP_006516207.1

  11. XM_006516145.5 → XP_006516208.1  uncharacterized protein LOC66323 isoform X1

    See identical proteins and their annotated locations for XP_006516208.1

Nucleotide Protein Strain
Heading Accession and Version

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