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Pgant5 polypeptide N-acetylgalactosaminyltransferase 5 [ Drosophila virilis ]

Gene ID: 6627616, updated on 24-May-2024

Summary

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Gene symbol
Pgant5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
Locus tag
Dvir_GJ24116
See related
EnsemblRapid:LOC6627616
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ24116; GJ24116-PB; GJ24116-PC
Orthologs
fruit fly all
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Genomic context

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See Pgant5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587572.1 (4084662..4107059, complement)

NW_022587572.1Genomic Context describing neighboring genes Neighboring gene 4'-phosphopantetheine phosphatase Neighboring gene ribosomal protein L37A Neighboring gene protein Hook homolog 1 Neighboring gene uncharacterized LOC116651725 Neighboring gene Proteasome beta4 subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587572 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5
Names
Dvir\GJ24116
Dvir\GJ24116-PB
Dvir\GJ24116-PC
dvir_GLEANR_942

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587572.1 Reference DvirRS2

    Range
    4084662..4107059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002051947.3 → XP_002051983.2  polypeptide N-acetylgalactosaminyltransferase 5 isoform X3

    UniProtKB/TrEMBL
    B4LUF2
    Related
    XP_002051983.2, XM_002051947.3
    Conserved Domains (2) summary
    cd02510
    Location:191 → 491
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:504 → 620
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_015173308.2 → XP_015028794.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X2

    UniProtKB/TrEMBL
    A0A0Q9WKK0
    Related
    XP_015028794.1, XM_015173308.2
    Conserved Domains (2) summary
    cd02510
    Location:192 → 492
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:505 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_032438106.1 → XP_032293997.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    Related
    XP_032293997.1, XM_032438106.1
    Conserved Domains (2) summary
    cd02510
    Location:192 → 492
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:505 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_032438107.1 → XP_032293998.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    Related
    XP_032293998.1, XM_032438107.1
    Conserved Domains (2) summary
    cd02510
    Location:192 → 492
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:505 → 621
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  5. XM_032438108.1 → XP_032293999.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X4

    Related
    XP_032293999.1, XM_032438108.1
    Conserved Domains (1) summary
    cl11394
    Location:192 → 400
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
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