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def peptide deformylase [ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ]

Gene ID: 66261315, updated on 6-Jun-2024

Summary

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Gene symbol
def
Gene description
peptide deformylase
Locus tag
HDEF_RS07685
Gene type
protein coding
Organism
Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) (strain: T5A, nat-host: Acyrthosiphon pisum)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; aphid secondary symbionts; Hamiltonella
Old locus tag
HDEF_1720
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Genomic context

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Sequence:
NC_012751.1 (1559749..1560264)

NC_012751.1Genomic Context describing neighboring genes Neighboring gene Sua5/YciO/YrdC/YwlC family protein Neighboring gene pseudo Neighboring gene methionyl-tRNA formyltransferase Neighboring gene 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012751.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Degnan PH, et al. Proc Natl Acad Sci U S A, 2009 Jun 2. PMID 19451630, Free PMC Article
  2. Structure-function relationships within the peptide deformylase family. Evidence for a conserved architecture of the active site involving three conserved motifs and a metal ion. Meinnel T, et al. J Mol Biol, 1997 Apr 4. PMID 9126850

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
peptide deformylase
WP_015874087.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012751.1 Reference assembly

    Range
    1559749..1560264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_015874087.1 peptide deformylase [Candidatus Hamiltonella defensa]

    See identical proteins and their annotated locations for WP_015874087.1

    UniProtKB/Swiss-Prot
    C4K6Y0
    UniProtKB/TrEMBL
    A0AAC9VIB1
    Conserved Domains (1) summary
    PRK00150
    Location:1 → 163
    def; peptide deformylase; Reviewed
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C4K6Y0.1