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Tmtc3 Transmembrane O-mannosyltransferase targeting cadherins 3 [ Drosophila virilis ]

Gene ID: 6625690, updated on 15-May-2024

Summary

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Gene symbol
Tmtc3
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
Dvir_GJ21796
See related
EnsemblRapid:LOC6625690
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ21796; GJ21796-PA
Orthologs
fruit fly all
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Genomic context

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See Tmtc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587568.1 (927861..932526, complement)

NW_022587568.1Genomic Context describing neighboring genes Neighboring gene potassium channel subfamily K member 18 Neighboring gene uncharacterized LOC116651121 Neighboring gene Tub domain-containing protein ktub Neighboring gene putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2 Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 Neighboring gene mago, exon junction complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587568 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase Tmtc3
Names
Dvir\GJ21796
Dvir\GJ21796-PA
dvir_GLEANR_7123

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587568.1 Reference DvirRS2

    Range
    927861..932526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002049780.3 → XP_002049816.1  protein O-mannosyl-transferase Tmtc3

    See identical proteins and their annotated locations for XP_002049816.1

    UniProtKB/TrEMBL
    B4LMR8
    Related
    XP_002049816.1, XM_002049780.3
    Conserved Domains (7) summary
    COG0457
    Location:462 → 760
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:601 → 628
    TPR; TPR repeat [structural motif]
    cd15832
    Location:532 → 585
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:668 → 701
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:326 → 399
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:810 → 873
    TPR_11; TPR repeat
    cl24038
    Location:532 → 738
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein Strain
Heading Accession and Version

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