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Pgant4 Polypeptide N-Acetylgalactosaminyltransferase 4 [ Drosophila sechellia ]

Gene ID: 6621140, updated on 23-May-2024

Summary

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Gene symbol
Pgant4
Gene description
Polypeptide N-Acetylgalactosaminyltransferase 4
Locus tag
Dsec_GM11142
See related
EnsemblRapid:LOC6621140
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM11142; GM11142-PA
Orthologs
fruit fly all
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Genomic context

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See Pgant4 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2L NC_045949.1 (3407830..3410430)

Chromosome 2L - NC_045949.1Genomic Context describing neighboring genes Neighboring gene Pif1 DNA helicase Neighboring gene putative polypeptide N-acetylgalactosaminyltransferase 10 Neighboring gene protein transport protein sec31 Neighboring gene eukaryotic translation initiation factor 4E binding protein thor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045949.1 Chromosome 2L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylgalactosaminyltransferase 4
Names
Dsec\GM11142
Dsec\GM11142-PA
dsec_GLEANR_11336

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045949.1 Reference ASM438219v1

    Range
    3407830..3410430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002045283.2 → XP_002045319.2  N-acetylgalactosaminyltransferase 4

    UniProtKB/TrEMBL
    B4INK9
    Related
    XP_002045319.2, XM_002045283.2
    Conserved Domains (2) summary
    cd02510
    Location:211 → 510
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:526 → 656
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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