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mys position-specific antigen beta subunit myospheroid [ Drosophila sechellia ]

Gene ID: 6620156, updated on 12-Oct-2024

Summary

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Gene symbol
mys
Gene description
position-specific antigen beta subunit myospheroid
Locus tag
Dsec_GM11222
See related
EnsemblRapid:LOC6620156
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM11222; GM11222-PA
Orthologs
fruit fly all
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Genomic context

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See mys in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (7801223..7809632)

Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6620158 Neighboring gene female sterile (1) homeotic Neighboring gene UPF2 regulator of nonsense mediated mRNA decay Neighboring gene dynein intermediate chain 3, ciliary Neighboring gene Lipid droplet subset dehydrogenase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045954.1 Chromosome X Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-PS
Names
Dsec\GM11222
Dsec\GM11222-PA
dsec_GLEANR_11457

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045954.1 Reference ASM438219v1

    Range
    7801223..7809632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032724456.1 → XP_032580347.1  integrin beta-PS isoform X1

    UniProtKB/TrEMBL
    B4IKV8
    Related
    XP_032580347.1, XM_032724456.1
    Conserved Domains (4) summary
    smart00187
    Location:45 → 497
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:684 → 764
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:795 → 835
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    NF033759
    Location:519 → 693
    exchanger_TraA; outer membrane exchange protein TraA

  2. XM_032724457.1 → XP_032580348.1  integrin beta-PS isoform X2

    Related
    XP_032580348.1, XM_032724457.1
    Conserved Domains (4) summary
    smart00187
    Location:45 → 497
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:684 → 764
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:795 → 835
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    NF033759
    Location:519 → 693
    exchanger_TraA; outer membrane exchange protein TraA

  3. XM_002044332.2 → XP_002044368.1  integrin beta-PS isoform X1

    See identical proteins and their annotated locations for XP_002044368.1

    UniProtKB/TrEMBL
    B4IKV8
    Related
    XP_002044368.1, XM_002044332.2
    Conserved Domains (4) summary
    smart00187
    Location:45 → 497
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:684 → 764
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:795 → 835
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    NF033759
    Location:519 → 693
    exchanger_TraA; outer membrane exchange protein TraA
Nucleotide Protein Strain
Heading Accession and Version

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