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LOC6618800 GPI mannosyltransferase 4 [ Drosophila sechellia ]

Gene ID: 6618800, updated on 10-May-2024

Summary

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Gene symbol
LOC6618800
Gene description
GPI mannosyltransferase 4
Locus tag
Dsec_GM11858
See related
EnsemblRapid:LOC6618800
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM11858; GM11858-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6618800 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2R NC_045950.1 (20369170..20372964)

Chromosome 2R - NC_045950.1Genomic Context describing neighboring genes Neighboring gene sodium-dependent serotonin transporter Neighboring gene regulatory particle non-ATPase 8 Neighboring gene uncharacterized LOC6618802 Neighboring gene UBX domain-containing protein 2B Neighboring gene chymotrypsin-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045950.1 Chromosome 2R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 4; cuticle protein 16.5
Names
Dsec\GM11858
Dsec\GM11858-PA
dsec_GLEANR_12210

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045950.1 Reference ASM438219v1

    Range
    20369170..20372964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002043013.2 → XP_002043049.1  GPI mannosyltransferase 4 isoform X2

    See identical proteins and their annotated locations for XP_002043049.1

    UniProtKB/TrEMBL
    B4IHF6
    Related
    XP_002043049.1, XM_002043013.2
    Conserved Domains (1) summary
    pfam03901
    Location:18 → 541
    Glyco_transf_22; Alg9-like mannosyltransferase family

  2. XM_032714707.1 → XP_032570598.1  cuticle protein 16.5 isoform X1

    Related
    XP_032570598.1, XM_032714707.1

RNA

  1. XR_004361283.1 RNA Sequence

    Related
    XR_004361283.1

  2. XR_004361282.1 RNA Sequence

    Related
    XR_004361282.1
Nucleotide Protein Strain
Heading Accession and Version

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