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Chpf Chondroitin polymerizing factor [ Drosophila sechellia ]

Gene ID: 6618623, updated on 23-May-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
Locus tag
Dsec_GM11515
See related
EnsemblRapid:LOC6618623
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM11515; GM11517; GM11515-PA; GM11517-PA
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (12856128..12872484, complement)

Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene dual specificity mitogen-activated protein kinase kinase hemipterous Neighboring gene probable alpha-aspartyl dipeptidase Neighboring gene dual specificity mitogen-activated protein kinase kinase lic Neighboring gene Ferritin 3 heavy chain homologue Neighboring gene uncharacterized LOC6618627 Neighboring gene uncharacterized LOC116802332 Neighboring gene type-1 angiotensin II receptor-associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045954.1 Chromosome X Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase
Names
Dsec\GM11515
Dsec\GM11515-PA
Dsec\GM11517
Dsec\GM11517-PA
dsec_GLEANR_11753
dsec_GLEANR_11755

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045954.1 Reference ASM438219v1

    Range
    12856128..12872484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032724926.1 → XP_032580817.1  chondroitin sulfate glucuronyltransferase isoform X1

    UniProtKB/TrEMBL
    B4IGM2
    Related
    XP_032580817.1, XM_032724926.1
    Conserved Domains (1) summary
    pfam05679
    Location:261 → 811
    CHGN; Chondroitin N-acetylgalactosaminyltransferase

  2. XM_032724927.1 → XP_032580818.1  chondroitin sulfate glucuronyltransferase isoform X2

    UniProtKB/TrEMBL
    B4IGM2
    Related
    XP_032580818.1, XM_032724927.1
    Conserved Domains (1) summary
    pfam05679
    Location:249 → 799
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein Strain
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