U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC6616375 fringe glycosyltransferase [ Drosophila sechellia ]

Gene ID: 6616375, updated on 10-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC6616375
Gene description
fringe glycosyltransferase
Locus tag
Dsec_GM22178
See related
EnsemblRapid:LOC6616375
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM22178; GM22178-PA
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC6616375 in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (20419698..20443273, complement)

Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116801090 Neighboring gene protein FAM98B Neighboring gene uncharacterized LOC6616376 Neighboring gene uncharacterized LOC116801075 Neighboring gene seminase Neighboring gene nardilysin Neighboring gene seminase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_045951.1 Chromosome 3L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
fringe glycosyltransferase
Names
Dsec\GM22178
Dsec\GM22178-PA
dsec_GLEANR_4972

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045951.1 Reference ASM438219v1

    Range
    20419698..20443273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002040699.2 → XP_002040735.1  fringe glycosyltransferase

    See identical proteins and their annotated locations for XP_002040735.1

    UniProtKB/TrEMBL
    B4IAH5
    Related
    XP_002040735.1, XM_002040699.2
    Conserved Domains (1) summary
    pfam02434
    Location:145 → 394
    Fringe; Fringe-like
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials