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LOC6616024 delta-sarcoglycan [ Drosophila sechellia ]

Gene ID: 6616024, updated on 10-May-2024

Summary

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Gene symbol
LOC6616024
Gene description
delta-sarcoglycan
Locus tag
Dsec_GM18955
See related
EnsemblRapid:LOC6616024
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM18955; GM18955-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6616024 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (1663042..1672265, complement)

Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6616018 Neighboring gene protein a6 Neighboring gene anionic trypsin-2 Neighboring gene uncharacterized LOC6616028 Neighboring gene Adenosine deaminase acting on RNA Neighboring gene uncharacterized LOC116802294

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045954.1 Chromosome X Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
Dsec\GM18955
Dsec\GM18955-PA
dsec_GLEANR_20563

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045954.1 Reference ASM438219v1

    Range
    1663042..1672265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032725833.1 → XP_032581724.1  delta-sarcoglycan

    Related
    XP_032581724.1, XM_032725833.1
    Conserved Domains (1) summary
    pfam04790
    Location:149 → 382
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_032725834.1 → XP_032581725.1  delta-sarcoglycan

    Related
    XP_032581725.1, XM_032725834.1
    Conserved Domains (1) summary
    pfam04790
    Location:149 → 382
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases
Research Materials