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betaggt-I geranylgeranyl transferase type-1 subunit beta [ Drosophila sechellia ]

Gene ID: 6613402, updated on 15-May-2024

Summary

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Gene symbol
betaggt-I
Gene description
geranylgeranyl transferase type-1 subunit beta
Locus tag
Dsec_GM18504
See related
EnsemblRapid:LOC6613402
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM18504; GM18505; GM18504-PA; GM18505-PA
Orthologs
fruit fly all
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Genomic context

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See betaggt-I in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2L NC_045949.1 (4856126..4858910)

Chromosome 2L - NC_045949.1Genomic Context describing neighboring genes Neighboring gene Salivary gland secretion 1 Neighboring gene uncharacterized LOC6613400 Neighboring gene mitochondrial ribosomal protein L24 Neighboring gene F-box and leucine rich repeat protein jetlag Neighboring gene serine protease 1 Neighboring gene serine protease 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045949.1 Chromosome 2L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CAAX-protein geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CAAX-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl transferase type-1 subunit beta
Names
Dsec\GM18504
Dsec\GM18504-PA
Dsec\GM18505
Dsec\GM18505-PA
dsec_GLEANR_19971
dsec_GLEANR_19972

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045949.1 Reference ASM438219v1

    Range
    4856126..4858910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032718716.1 → XP_032574607.1  geranylgeranyl transferase type-1 subunit beta isoform X2

    Related
    XP_032574607.1, XM_032718716.1
    Conserved Domains (1) summary
    cd02895
    Location:14 → 321
    GGTase-I; Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes ...

  2. XM_002037840.2 → XP_002037876.2  geranylgeranyl transferase type-1 subunit beta isoform X1

    Related
    XP_002037876.2, XM_002037840.2
    Conserved Domains (1) summary
    cd02895
    Location:20 → 327
    GGTase-I; Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes ...
Nucleotide Protein Strain
Heading Accession and Version

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