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LOC6613160 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila sechellia ]

Gene ID: 6613160, updated on 10-May-2024

Summary

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Gene symbol
LOC6613160
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dsec_GM18370
See related
EnsemblRapid:LOC6613160
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM18370; GM18370-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6613160 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2L NC_045949.1 (2769035..2790026)

Chromosome 2L - NC_045949.1Genomic Context describing neighboring genes Neighboring gene inhibin beta A chain Neighboring gene pyruvate kinase Neighboring gene glucose-6-phosphatase 2 Neighboring gene dual oxidase Neighboring gene uncharacterized LOC6613157 Neighboring gene uncharacterized LOC116803574 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene Cuticular protein 23B Neighboring gene uncharacterized LOC6613161 Neighboring gene phenoloxidase-activating factor 2 Neighboring gene phenoloxidase-activating factor 2 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045949.1 Chromosome 2L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dsec\GM18370
Dsec\GM18370-PA
dsec_GLEANR_19848

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045949.1 Reference ASM438219v1

    Range
    2769035..2790026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032727433.1 → XP_032583324.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    B4I2R4
    Related
    XP_032583324.1, XM_032727433.1
    Conserved Domains (1) summary
    cl21608
    Location:111 → 235
    Galactosyl_T; Galactosyltransferase

  2. XM_032727435.1 → XP_032583326.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    B4I2R4
    Related
    XP_032583326.1, XM_032727435.1
    Conserved Domains (1) summary
    cl21608
    Location:111 → 235
    Galactosyl_T; Galactosyltransferase

  3. XM_032727434.1 → XP_032583325.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    B4I2R4
    Related
    XP_032583325.1, XM_032727434.1
    Conserved Domains (1) summary
    cl21608
    Location:111 → 235
    Galactosyl_T; Galactosyltransferase

  4. XM_032727436.1 → XP_032583327.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    B4I2R4
    Related
    XP_032583327.1, XM_032727436.1
    Conserved Domains (1) summary
    cl21608
    Location:91 → 215
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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