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LOC6613158 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila sechellia ]

Gene ID: 6613158, updated on 10-May-2024

Summary

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Gene symbol
LOC6613158
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dsec_GM18192
See related
EnsemblRapid:LOC6613158
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM18192; GM18192-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6613158 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2L NC_045949.1 (2782321..2785688, complement)

Chromosome 2L - NC_045949.1Genomic Context describing neighboring genes Neighboring gene pyruvate kinase Neighboring gene glucose-6-phosphatase 2 Neighboring gene dual oxidase Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene uncharacterized LOC6613157 Neighboring gene uncharacterized LOC116803574 Neighboring gene Cuticular protein 23B Neighboring gene uncharacterized LOC6613161

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045949.1 Chromosome 2L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dsec\GM18192
Dsec\GM18192-PA
dsec_GLEANR_19680

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045949.1 Reference ASM438219v1

    Range
    2782321..2785688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002037603.2 → XP_002037639.2  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    B4I2R2
    Related
    XP_002037639.2, XM_002037603.2
    Conserved Domains (1) summary
    cl21608
    Location:176 → 233
    Galactosyl_T; Galactosyltransferase

  2. XM_032727438.1 → XP_032583329.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    Related
    XP_032583329.1, XM_032727438.1
    Conserved Domains (1) summary
    cl21608
    Location:176 → 207
    Galactosyl_T; Galactosyltransferase

  3. XM_032727437.1 → XP_032583328.1  chondroitin sulfate synthase 1 isoform X2

    Related
    XP_032583328.1, XM_032727437.1
    Conserved Domains (1) summary
    cl21608
    Location:176 → 232
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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