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LOC6612539 beta-1,3-galactosyltransferase brn [ Drosophila sechellia ]

Gene ID: 6612539, updated on 10-May-2024

Summary

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Gene symbol
LOC6612539
Gene description
beta-1,3-galactosyltransferase brn
Locus tag
Dsec_GM12324
See related
EnsemblRapid:LOC6612539
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM12324; GM12324-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6612539 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (3882569..3883919)

Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6612542 Neighboring gene DNA repair protein complementing XP-A cells homolog Xpac Neighboring gene thymosin beta cib Neighboring gene tRNA (cytosine(34)-C(5))-methyltransferase Nsun2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045954.1 Chromosome X Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase brn
Names
Dsec\GM12324
Dsec\GM12324-PA
dsec_GLEANR_12744

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045954.1 Reference ASM438219v1

    Range
    3882569..3883919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002037011.2 → XP_002037047.1  beta-1,3-galactosyltransferase brn

    See identical proteins and their annotated locations for XP_002037047.1

    UniProtKB/TrEMBL
    B4I125
    Related
    XP_002037047.1, XM_002037011.2
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 282
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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