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LOC6610247 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila sechellia ]

Gene ID: 6610247, updated on 10-May-2024

Summary

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Gene symbol
LOC6610247
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dsec_GM14364
See related
EnsemblRapid:LOC6610247
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM14364; GM14364-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6610247 in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (966276..967597)

Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific protease 10 Neighboring gene monocarboxylate transporter 12 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene uncharacterized LOC6610248 Neighboring gene nervous fingers 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045951.1 Chromosome 3L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dsec\GM14364
Dsec\GM14364-PA
dsec_GLEANR_15146

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045951.1 Reference ASM438219v1

    Range
    966276..967597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002034806.2 → XP_002034842.2  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    B4HVL3
    Related
    XP_002034842.2, XM_002034806.2
    Conserved Domains (1) summary
    cl21608
    Location:77 → 227
    Galactosyl_T; Galactosyltransferase

  2. XM_032719137.1 → XP_032575028.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    B4HVL3
    Related
    XP_032575028.1, XM_032719137.1
    Conserved Domains (1) summary
    cl21608
    Location:77 → 227
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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