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LOC6609355 ATP-citrate synthase [ Drosophila sechellia ]

Gene ID: 6609355, updated on 10-May-2024

Summary

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Gene symbol
LOC6609355
Gene description
ATP-citrate synthase
Locus tag
Dsec_GM20101
See related
EnsemblRapid:LOC6609355
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM20101; GM20101-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6609355 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2R NC_045950.1 (12072946..12080393, complement)

Chromosome 2R - NC_045950.1Genomic Context describing neighboring genes Neighboring gene peroxisomal membrane protein 11B Neighboring gene transmembrane protein 208 Neighboring gene Transmembrane protein 131 Neighboring gene monocarboxylate transporter 12 Neighboring gene Ubiquitin-fold modifier conjugating enzyme 1 Neighboring gene transcription factor grauzone

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045950.1 Chromosome 2R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP citrate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-citrate synthase
Names
Dsec\GM20101
Dsec\GM20101-PA
dsec_GLEANR_2922

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045950.1 Reference ASM438219v1

    Range
    12072946..12080393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032714656.1 → XP_032570547.1  ATP-citrate synthase isoform X1

    Related
    XP_032570547.1, XM_032714656.1
    Conserved Domains (2) summary
    PLN02522
    Location:503 → 1106
    PLN02522; ATP citrate (pro-S)-lyase
    cl29684
    Location:1 → 421
    Citrate_bind; ATP citrate lyase citrate-binding

  2. XM_002034008.2 → XP_002034044.1  ATP-citrate synthase isoform X3

    See identical proteins and their annotated locations for XP_002034044.1

    UniProtKB/TrEMBL
    B4HSH9
    Related
    XP_002034044.1, XM_002034008.2
    Conserved Domains (7) summary
    cd06100
    Location:851 → 1088
    CCL_ACL-C; Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ...
    PLN02235
    Location:1 → 421
    PLN02235; ATP citrate (pro-S)-lyase
    PLN02522
    Location:486 → 1089
    PLN02522; ATP citrate (pro-S)-lyase
    smart00881
    Location:487 → 596
    CoA_binding; CoA binding domain
    pfam16114
    Location:248 → 423
    Citrate_bind; ATP citrate lyase citrate-binding
    cl17255
    Location:52 → 208
    ATP-grasp_4; ATP-grasp domain
    cl22543
    Location:655 → 779
    Ligase_CoA; CoA-ligase

  3. XM_032714658.1 → XP_032570549.1  ATP-citrate synthase isoform X2

    Related
    XP_032570549.1, XM_032714658.1
    Conserved Domains (2) summary
    PLN02522
    Location:487 → 1090
    PLN02522; ATP citrate (pro-S)-lyase
    cl29684
    Location:1 → 421
    Citrate_bind; ATP citrate lyase citrate-binding

  4. XM_032714655.1 → XP_032570546.1  ATP-citrate synthase isoform X1

    Related
    XP_032570546.1, XM_032714655.1
    Conserved Domains (2) summary
    PLN02522
    Location:503 → 1106
    PLN02522; ATP citrate (pro-S)-lyase
    cl29684
    Location:1 → 421
    Citrate_bind; ATP citrate lyase citrate-binding

  5. XM_032714657.1 → XP_032570548.1  ATP-citrate synthase isoform X1

    Related
    XP_032570548.1, XM_032714657.1
    Conserved Domains (2) summary
    PLN02522
    Location:503 → 1106
    PLN02522; ATP citrate (pro-S)-lyase
    cl29684
    Location:1 → 421
    Citrate_bind; ATP citrate lyase citrate-binding
Nucleotide Protein Strain
Heading Accession and Version

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