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HAS1 ATP-dependent RNA helicase [ Marasmius oreades ]

Gene ID: 66070393, updated on 30-Nov-2023

Summary

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Gene symbol
HAS1
Gene description
ATP-dependent RNA helicase
Locus tag
E1B28_001317
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Marasmius oreades (isolate: 03SP1)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Marasmiaceae; Marasmius
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Genomic context

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See HAS1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_057323.1 (3734353..3736426)

Chromosome 1 - NC_057323.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057323.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades. Hiltunen M, et al. Genome Biol Evol, 2021 Jul 6. PMID 34051082, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase
XP_043015937.1
  • BUSCO:EOG09261F73

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057323.1 Reference assembly

    Range
    3734353..3736426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043147233.1 → XP_043015938.1  ATP-dependent RNA helicase, variant 2 [Marasmius oreades]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A9P7V3B8
    Conserved Domains (2) summary
    cd17942
    Location:29 → 227
    DEADc_DDX18; DEAD-box helicase domain of DEAD box protein 18
    cl38915
    Location:240 → 296
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases

  2. XM_043147232.1 → XP_043015937.1  ATP-dependent RNA helicase [Marasmius oreades]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A9P7V3A9
    Conserved Domains (2) summary
    COG0513
    Location:18 → 505
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17942
    Location:29 → 227
    DEADc_DDX18; DEAD-box helicase domain of DEAD box protein 18
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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