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Tmtc4 Transmembrane O-mannosyltransferase targeting cadherins 4 [ Drosophila sechellia ]

Gene ID: 6606270, updated on 16-May-2024

Summary

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Gene symbol
Tmtc4
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
Dsec_GM24226
See related
EnsemblRapid:LOC6606270
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM24226; GM24226-PA
Orthologs
fruit fly all
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Genomic context

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See Tmtc4 in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3R NC_045952.1 (13264012..13266369, complement)

Chromosome 3R - NC_045952.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 2 Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial Neighboring gene cysteine protease ATG4D Neighboring gene uncharacterized LOC116801564 Neighboring gene trafficking protein particle complex subunit Trs33 Neighboring gene zinc finger protein 468

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045952.1 Chromosome 3R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4
Names
Dsec\GM24226
Dsec\GM24226-PA
dsec_GLEANR_7231

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045952.1 Reference ASM438219v1

    Range
    13264012..13266369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002031039.2 → XP_002031075.1  protein O-mannosyl-transferase TMTC4

    See identical proteins and their annotated locations for XP_002031075.1

    UniProtKB/TrEMBL
    B4HM24
    Related
    XP_002031075.1, XM_002031039.2
    Conserved Domains (5) summary
    COG0457
    Location:390 → 674
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 506
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:546 → 577
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13431
    Location:466 → 499
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein Strain
Heading Accession and Version

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