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ktub Tub domain-containing protein ktub [ Drosophila persimilis ]

Gene ID: 6600864, updated on 23-May-2024

Summary

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Gene symbol
ktub
Gene description
Tub domain-containing protein ktub
Locus tag
Dper_GL10151
See related
EnsemblRapid:LOC6600864
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL10151; GL10151-PA; king-tubby
Orthologs
fruit fly all
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Genomic context

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See ktub in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825289.1 (20541611..20565022)

NW_020825289.1Genomic Context describing neighboring genes Neighboring gene Rab GTPase-binding effector protein rabaptin-5 Neighboring gene potassium channel subfamily K member 18 Neighboring gene glycerophosphocholine phosphodiesterase GPCPD1 Neighboring gene Transmembrane O-mannosyltransferase targeting cadherins 3 Neighboring gene mago, exon junction complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825289 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein king tubby
Names
Dper\GL10151
Dper\GL10151-PA
dper_GLEANR_10211

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825289.1 Reference DperRS2

    Range
    20541611..20565022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002025863.2 → XP_002025899.1  protein king tubby isoform X1

    See identical proteins and their annotated locations for XP_002025899.1

    UniProtKB/Swiss-Prot
    B4H4X0
    Related
    XP_002025899.1, XM_002025863.2
    Conserved Domains (2) summary
    pfam01167
    Location:218 → 452
    Tub; Tub family
    pfam16322
    Location:13 → 161
    Tub_N; Tubby N-terminal

  2. XM_026985502.1 → XP_026841303.1  protein king tubby isoform X2

    Related
    XP_026841303.1, XM_026985502.1
    Conserved Domains (1) summary
    pfam01167
    Location:215 → 449
    Tub; Tub family

RNA

  1. XR_003408432.1 RNA Sequence

    Related
    XR_003408432.1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B4H4X0.1 GenPept UniProtKB/Swiss-Prot:B4H4X0

Gene LinkOut

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Research Materials