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LOC6598460 irregular chiasm C-roughest protein [ Drosophila persimilis ]

Gene ID: 6598460, updated on 10-May-2024

Summary

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Gene symbol
LOC6598460
Gene description
irregular chiasm C-roughest protein
Locus tag
Dper_GL19784
See related
EnsemblRapid:LOC6598460
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL19784; GL19784-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6598460 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825322.1 (2659912..2684382)

NW_020825322.1Genomic Context describing neighboring genes Neighboring gene period circadian protein Neighboring gene uncharacterized LOC6598461 Neighboring gene estradiol 17-beta-dehydrogenase 8 Neighboring gene uncharacterized LOC6598458

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825322 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein
Names
Dper\GL19784
Dper\GL19784-PA
dper_GLEANR_22074

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825322.1 Reference DperRS2

    Range
    2659912..2684382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026990420.1 → XP_026846221.1  irregular chiasm C-roughest protein

    Related
    XP_026846221.1, XM_026990420.1
    Conserved Domains (5) summary
    pfam08205
    Location:152 → 242
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13895
    Location:357 → 428
    Ig_2; Immunoglobulin domain
    cd00096
    Location:283 → 343
    Ig; Immunoglobulin domain
    cl11960
    Location:434 → 530
    Ig; Immunoglobulin domain
    cl28434
    Location:46 → 127
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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Research Materials