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Chpf Chondroitin polymerizing factor [ Drosophila persimilis ]

Gene ID: 6597695, updated on 23-May-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
Locus tag
Dper_GL16491
See related
EnsemblRapid:LOC6597695
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL16491; GL20565; GL16491-PA; GL20565-PA
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825324.1 (2504852..2522165, complement)

NW_020825324.1Genomic Context describing neighboring genes Neighboring gene dual specificity mitogen-activated protein kinase kinase lic Neighboring gene probable alpha-aspartyl dipeptidase Neighboring gene Ferritin 3 heavy chain homologue Neighboring gene Actin-related protein 6 Neighboring gene DNL-type zinc finger protein Neighboring gene uncharacterized LOC6597701 Neighboring gene Iron-sulfur cluster assembly 1 homolog MagR

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825324 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase
Names
Dper\GL16491
Dper\GL16491-PA
Dper\GL20565
Dper\GL20565-PA
dper_GLEANR_18147
dper_GLEANR_22959

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825324.1 Reference DperRS2

    Range
    2504852..2522165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026990755.1 → XP_026846556.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    B4GW97
    Related
    XP_026846556.1, XM_026990755.1
    Conserved Domains (1) summary
    pfam05679
    Location:245 → 794
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
Heading Accession and Version

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