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Tmtc2 Transmembrane O-mannosyltransferase targeting cadherins 2 [ Drosophila persimilis ]

Gene ID: 6595608, updated on 15-May-2024

Summary

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Gene symbol
Tmtc2
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 2
Locus tag
Dper_GL16428
See related
EnsemblRapid:LOC6595608
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL16428; GL16428-PA
Orthologs
fruit fly all
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Genomic context

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See Tmtc2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825298.1 (600230..629539, complement)

NW_020825298.1Genomic Context describing neighboring genes Neighboring gene protein borderless Neighboring gene ABC transporter expressed in trachea Neighboring gene uncharacterized LOC6595603 Neighboring gene Glutamate receptor IIC Neighboring gene neither inactivation nor afterpotential A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825298 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein CG4341
Names
Dper\GL16428
Dper\GL16428-PA
dper_GLEANR_1809

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825298.1 Reference DperRS2

    Range
    600230..629539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026988188.1 → XP_026843989.1  transmembrane and TPR repeat-containing protein CG4341 isoform X1

    UniProtKB/TrEMBL
    B4GQP8
    Related
    XP_026843989.1, XM_026988188.1
    Conserved Domains (3) summary
    TIGR02917
    Location:619 → 955
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:625 → 653
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:277 → 345
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_026988189.1 → XP_026843990.1  transmembrane and TPR repeat-containing protein CG4341 isoform X2

    UniProtKB/TrEMBL
    B4GQP8
    Related
    XP_026843990.1, XM_026988189.1
    Conserved Domains (3) summary
    COG0457
    Location:613 → 822
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:625 → 653
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:277 → 345
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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