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C1GalTA Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila persimilis ]

Gene ID: 6593437, updated on 24-May-2024

Summary

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Gene symbol
C1GalTA
Gene description
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dper_GL25549
See related
EnsemblRapid:LOC6593437
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL25549; GL25549-PA
Orthologs
fruit fly all
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Genomic context

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See C1GalTA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825294.1 (477890..486003)

NW_020825294.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6593439 Neighboring gene uncharacterized LOC113565391 Neighboring gene Dipeptidyl peptidase 10 Neighboring gene uncharacterized LOC113565542

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825294 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dper\GL25549
Dper\GL25549-PA
dper_GLEANR_8128

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825294.1 Reference DperRS2

    Range
    477890..486003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002019157.2 → XP_002019193.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    See identical proteins and their annotated locations for XP_002019193.1

    UniProtKB/TrEMBL
    B4GJ75
    Related
    XP_002019193.1, XM_002019157.2
    Conserved Domains (1) summary
    cl21608
    Location:119 → 265
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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