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Csgalnact Chondroitin sulfate N-acetylgalactosaminyltransferase [ Drosophila persimilis ]

Gene ID: 6590525, updated on 22-May-2024

Summary

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Gene symbol
Csgalnact
Gene description
Chondroitin sulfate N-acetylgalactosaminyltransferase
Locus tag
Dper_GL11584
See related
EnsemblRapid:LOC6590525
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL11584; GL11584-PA
Orthologs
fruit fly all
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Genomic context

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See Csgalnact in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825289.1 (9904568..9912050)

NW_020825289.1Genomic Context describing neighboring genes Neighboring gene histidine decarboxylase Neighboring gene uncharacterized LOC6590522 Neighboring gene uncharacterized LOC6590523 Neighboring gene keratin, type I cytoskeletal 9 Neighboring gene Vesicle-associated membrane protein synaptobrevin Neighboring gene atrophin-1 Neighboring gene esterase B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825289 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Names
Dper\GL11584
Dper\GL11584-PA
dper_GLEANR_11724

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825289.1 Reference DperRS2

    Range
    9904568..9912050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026986771.1 → XP_026842572.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    B4GC01
    Related
    XP_026842572.1, XM_026986771.1
    Conserved Domains (1) summary
    cl11394
    Location:60 → 520
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_002016418.2 → XP_002016454.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_002016454.1

    UniProtKB/TrEMBL
    B4GC01
    Related
    XP_002016454.1, XM_002016418.2
    Conserved Domains (1) summary
    cl11394
    Location:60 → 520
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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