U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Sf3a1 splicing factor 3A subunit 1 [ Drosophila persimilis ]

Gene ID: 6587296, updated on 15-May-2024

Summary

Go to the top of the page Help
Gene symbol
Sf3a1
Gene description
splicing factor 3A subunit 1
Locus tag
Dper_GL22993
See related
EnsemblRapid:LOC6587296
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL22993; GL22994; GL22993-PA; GL22994-PA
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Sf3a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825288.1 (18378063..18381207, complement)

NW_020825288.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6588595 Neighboring gene ER membrane protein complex subunit 2A Neighboring gene xylulose kinase Neighboring gene peroxidase Neighboring gene epidermal growth factor receptor kinase substrate 8

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020825288 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
splicing factor 3A subunit 1
Names
Dper\GL22993
Dper\GL22993-PA
Dper\GL22994
Dper\GL22994-PA
dper_GLEANR_5352
dper_GLEANR_5353

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825288.1 Reference DperRS2

    Range
    18378063..18381207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026985096.1 → XP_026840897.1  splicing factor 3A subunit 1 isoform X2

    Related
    XP_026840897.1, XM_026985096.1
    Conserved Domains (4) summary
    smart00648
    Location:36 → 89
    SWAP; Suppressor-of-White-APricot splicing regulator
    cd01800
    Location:700 → 781
    Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
    pfam01805
    Location:148 → 198
    Surp; Surp module
    pfam12230
    Location:226 → 478
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

  2. XM_002014148.2 → XP_002014184.2  splicing factor 3A subunit 1 isoform X1

    Related
    XP_002014184.2, XM_002014148.2
    Conserved Domains (4) summary
    cd01800
    Location:732 → 807
    SF3a120_C; Ubiquitin-like domain of Mammalian splicing factor SF3a_120
    smart00648
    Location:36 → 89
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam01805
    Location:167 → 217
    Surp; Surp module
    pfam12230
    Location:245 → 497
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.