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LOC6571130 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila grimshawi ]

Gene ID: 6571130, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6571130
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dgri_GH12988
See related
EnsemblRapid:LOC6571130
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH12988; GH12988-PA
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Genomic context

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See LOC6571130 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062489.1 (880921..882743, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001963676.1 (1463..3285)

NW_025062489.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116805598 Neighboring gene uncharacterized LOC6565441 Neighboring gene serine protease Hayan Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like Neighboring gene uncharacterized LOC6565398

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dgri\GH12988
Dgri\GH12988-PA
dgri_GLEANR_12937

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062489.1 Reference ASM1815329v1

    Range
    880921..882743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043215610.1 → XP_043071545.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    B4K232
    Related
    XP_043071545.1, XM_043215610.1
Nucleotide Protein
Heading Accession and Version

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