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LOC657082 proteasome subunit alpha type-6 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 657082, updated on 12-Apr-2024

Summary

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Gene symbol
LOC657082
Gene description
proteasome subunit alpha type-6
Locus tag
TcasGA2_TC000614
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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See LOC657082 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (6246342..6247257)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (8986515..8987420, complement)

Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene gametocyte-specific factor 1 homolog Neighboring gene gametocyte-specific factor 1 homolog Neighboring gene neurogenic locus Notch protein Neighboring gene TBC domain-containing protein kinase-like protein Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene Transaldolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex, alpha-subunit complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome subunit alpha type-6
Names
AUGUSTUS-3.0.2_00614
GLEAN_00614
Proteasome subunit alpha type-6-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

    Range
    6246342..6247257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_963562.5 → XP_968655.1  proteasome subunit alpha type-6

    See identical proteins and their annotated locations for XP_968655.1

    UniProtKB/TrEMBL
    D6W9B2
    Conserved Domains (2) summary
    PRK03996
    Location:6 → 242
    PRK03996; proteasome subunit alpha; Provisional
    cd03754
    Location:8 → 220
    proteasome_alpha_type_6; proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on ...
Nucleotide Protein Strain
Heading Accession and Version

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