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LOC6569140 GPI mannosyltransferase 2 [ Drosophila grimshawi ]

Gene ID: 6569140, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6569140
Gene description
GPI mannosyltransferase 2
Locus tag
Dgri_GH22950
See related
EnsemblRapid:LOC6569140
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH22950; GH22952; GH22950-PA; GH22952-PA
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Genomic context

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See LOC6569140 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (3008894..3013690, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961681.1 (1026578..1031372)

NW_025062889.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6569143 Neighboring gene calbindin-32 Neighboring gene ste24c prenyl protease type I Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene uncharacterized LOC6569065 Neighboring gene uncharacterized LOC6569064

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2; uncharacterized protein LOC6569140
Names
Dgri\GH22950
Dgri\GH22950-PA
Dgri\GH22952
Dgri\GH22952-PA
dgri_GLEANR_7259
dgri_GLEANR_7260

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062889.1 Reference ASM1815329v1

    Range
    3008894..3013690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001995038.3 → XP_001995074.2  uncharacterized protein LOC6569140 isoform X3

    UniProtKB/TrEMBL
    B4JW08
    Related
    XP_001995074.2, XM_001995038.3
    Conserved Domains (1) summary
    pfam07406
    Location:79 → 259
    NICE-3; NICE-3 protein

  2. XM_043216193.1 → XP_043072128.1  uncharacterized protein LOC6569140 isoform X2

    Related
    XP_043072128.1, XM_043216193.1

  3. XM_001995037.3 → XP_001995073.1  GPI mannosyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_001995073.1

    UniProtKB/TrEMBL
    B4JW07
    Related
    XP_001995073.1, XM_001995037.3
    Conserved Domains (1) summary
    cl21590
    Location:5 → 452
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
Heading Accession and Version

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