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botv exostosin like glycosyltransferase 3 [ Drosophila grimshawi ]

Gene ID: 6568946, updated on 23-May-2024

Summary

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Gene symbol
botv
Gene description
exostosin like glycosyltransferase 3
Locus tag
Dgri_GH23150
See related
EnsemblRapid:LOC6568946
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH23150; GH23150-PA
Orthologs
fruit fly all
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Genomic context

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See botv in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062826.1 (103561..107163, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961681.1 (4810613..4814215)

NW_025062826.1Genomic Context describing neighboring genes Neighboring gene low-density lipoprotein receptor-related protein 6 Neighboring gene crowded by cid Neighboring gene ankyrin repeat domain-containing protein 13D Neighboring gene lysophosphatidylserine lipase ABHD12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-3
Names
Dgri\GH23150
Dgri\GH23150-PA
dgri_GLEANR_7440

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062826.1 Reference ASM1815329v1

    Range
    103561..107163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032740966.1 → XP_032596857.1  exostosin-3

    UniProtKB/TrEMBL
    B4JVM9
    Related
    XP_032596857.1, XM_032740966.1
    Conserved Domains (3) summary
    TIGR02169
    Location:107 → 195
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam03016
    Location:225 → 561
    Exostosin; Exostosin family
    pfam09258
    Location:724 → 962
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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