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Tmtc4 Transmembrane O-mannosyltransferase targeting cadherins 4 [ Drosophila grimshawi ]

Gene ID: 6568217, updated on 16-May-2024

Summary

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Gene symbol
Tmtc4
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
Dgri_GH16619
See related
EnsemblRapid:LOC6568217
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH16619; GH16619-PA
Orthologs
fruit fly all
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Genomic context

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See Tmtc4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063098.1 (26650953..26654291)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961680.1 (177023..180471, complement)

NW_025063098.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 391 Neighboring gene uncharacterized LOC116805869 Neighboring gene trafficking protein particle complex subunit Trs33 Neighboring gene cysteine protease ATG4C Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial Neighboring gene conserved oligomeric Golgi complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4
Names
Dgri\GH16619
Dgri\GH16619-PA
dgri_GLEANR_1630

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063098.1 Reference ASM1815329v1

    Range
    26650953..26654291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001994348.3 → XP_001994384.1  protein O-mannosyl-transferase TMTC4

    See identical proteins and their annotated locations for XP_001994384.1

    UniProtKB/TrEMBL
    B4JU43
    Related
    XP_001994384.1, XM_001994348.3
    Conserved Domains (5) summary
    sd00006
    Location:478 → 504
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:510 → 543
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:255 → 329
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:510 → 575
    TPR_11; TPR repeat
    pfam13428
    Location:478 → 517
    TPR_14; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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