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LOC6566861 alpha-(1,3)-fucosyltransferase B [ Drosophila grimshawi ]

Gene ID: 6566861, updated on 10-May-2024

Summary

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Gene symbol
LOC6566861
Gene description
alpha-(1,3)-fucosyltransferase B
Locus tag
Dgri_GH13596
See related
EnsemblRapid:LOC6566861
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH13596; GH13596-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6566861 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062900.1 (20237577..20239345)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961678.1 (2115317..2117085)

NW_025062900.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6566966 Neighboring gene VPS54 subunit of GARP complex scat Neighboring gene Fat body protein 2 Neighboring gene Multicopper oxidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,3)-fucosyltransferase B
Names
Dgri\GH13596
Dgri\GH13596-PA
dgri_GLEANR_13499

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062900.1 Reference ASM1815329v1

    Range
    20237577..20239345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001992979.2 → XP_001993015.1  alpha-(1,3)-fucosyltransferase B

    See identical proteins and their annotated locations for XP_001993015.1

    UniProtKB/TrEMBL
    B4JPW0
    Related
    XP_001993015.1, XM_001992979.2
    Conserved Domains (2) summary
    pfam00852
    Location:182 → 314
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:62 → 140
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
Heading Accession and Version

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Research Materials