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LOC6566712 lactosylceramide 4-alpha-galactosyltransferase [ Drosophila grimshawi ]

Gene ID: 6566712, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6566712
Gene description
lactosylceramide 4-alpha-galactosyltransferase
Locus tag
Dgri_GH13060
See related
EnsemblRapid:LOC6566712
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH13060; GH13060-PA
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Genomic context

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See LOC6566712 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062900.1 (24816539..24818050, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961678.1 (6687505..6689055, complement)

NW_025062900.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 85 Neighboring gene uncharacterized LOC6566711 Neighboring gene lactosylceramide 4-alpha-galactosyltransferase Neighboring gene inositol-trisphosphate 3-kinase-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase
Names
Dgri\GH13060
Dgri\GH13060-PA
dgri_GLEANR_13009

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062900.1 Reference ASM1815329v1

    Range
    24816539..24818050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001993423.3 → XP_001993459.1  lactosylceramide 4-alpha-galactosyltransferase isoform X1

    See identical proteins and their annotated locations for XP_001993459.1

    UniProtKB/TrEMBL
    B4JR54
    Related
    XP_001993459.1, XM_001993423.3
    Conserved Domains (2) summary
    pfam04572
    Location:241 → 367
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:104 → 214
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  2. XM_032739336.2 → XP_032595227.1  lactosylceramide 4-alpha-galactosyltransferase isoform X2

    Related
    XP_032595227.1, XM_032739336.2
    Conserved Domains (2) summary
    pfam04572
    Location:214 → 340
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:125 → 187
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  3. XM_032739335.2 → XP_032595226.1  lactosylceramide 4-alpha-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    B4JR54
    Related
    XP_032595226.1, XM_032739335.2
    Conserved Domains (2) summary
    pfam04572
    Location:241 → 367
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:104 → 214
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein
Heading Accession and Version

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