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LOC6565431 C-mannosyltransferase dpy-19 homolog [ Drosophila grimshawi ]

Gene ID: 6565431, updated on 10-May-2024

Summary

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Gene symbol
LOC6565431
Gene description
C-mannosyltransferase dpy-19 homolog
Locus tag
Dgri_GH12203
See related
EnsemblRapid:LOC6565431
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH12203; GH12203-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6565431 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063692.1 (22606775..22611003)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961676.1 (3696737..3700964, complement)

NW_025063692.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 enzyme phantom Neighboring gene zinc metalloproteinase nas-7 Neighboring gene uncharacterized LOC6565429 Neighboring gene STKc_STK36 domain-containing protein fused Neighboring gene uncharacterized protein DDB_G0283357

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-mannosyltransferase dpy-19 homolog
Names
Dgri\GH12203
Dgri\GH12203-PA
dgri_GLEANR_12105

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063692.1 Reference ASM1815329v1

    Range
    22606775..22611003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001991150.3 → XP_001991186.1  C-mannosyltransferase dpy-19 homolog

    See identical proteins and their annotated locations for XP_001991186.1

    UniProtKB/TrEMBL
    B4JJQ8
    Related
    XP_001991186.1, XM_001991150.3
    Conserved Domains (2) summary
    pfam05615
    Location:410 → 521
    THOC7; Tho complex subunit 7
    pfam10034
    Location:18 → 833
    Dpy19; Q-cell neuroblast polarization
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials