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LOC6561386 N-acetylgalactosaminyltransferase 4 [ Drosophila grimshawi ]

Gene ID: 6561386, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6561386
Gene description
N-acetylgalactosaminyltransferase 4
Locus tag
Dgri_GH10909
See related
EnsemblRapid:LOC6561386
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH10909; GH10909-PA
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Genomic context

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See LOC6561386 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062900.1 (16570043..16572400, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961674.1 (752317..754674)

NW_025062900.1Genomic Context describing neighboring genes Neighboring gene dual oxidase maturation factor 1 mol Neighboring gene neural cell adhesion molecule 1-B Neighboring gene uncharacterized LOC116805246 Neighboring gene N-acetylgalactosaminyltransferase 4 Neighboring gene uncharacterized LOC6562544

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylgalactosaminyltransferase 4
Names
Dgri\GH10909
Dgri\GH10909-PA
dgri_GLEANR_10823

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062900.1 Reference ASM1815329v1

    Range
    16570043..16572400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001987927.2 → XP_001987963.2  N-acetylgalactosaminyltransferase 4

    UniProtKB/TrEMBL
    B4JAW0
    Related
    XP_001987963.2, XM_001987927.2
    Conserved Domains (2) summary
    cd02510
    Location:192 → 491
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:507 → 635
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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