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Csgalnact Chondroitin sulfate N-acetylgalactosaminyltransferase [ Drosophila grimshawi ]

Gene ID: 6560215, updated on 22-May-2024

Summary

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Gene symbol
Csgalnact
Gene description
Chondroitin sulfate N-acetylgalactosaminyltransferase
Locus tag
Dgri_GH21775
See related
EnsemblRapid:LOC6560215
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH21775; GH21775-PA
Orthologs
fruit fly all
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Genomic context

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See Csgalnact in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062891.1 (2658677..2665850)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961673.1 (12830716..12837889)

NW_025062891.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6561155 Neighboring gene uncharacterized LOC6561156 Neighboring gene Vesicle-associated membrane protein synaptobrevin Neighboring gene RNA-binding motif protein, X-linked-like-3 Neighboring gene uncharacterized LOC6560217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Names
Dgri\GH21775
Dgri\GH21775-PA
dgri_GLEANR_5905

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062891.1 Reference ASM1815329v1

    Range
    2658677..2665850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032734513.1 → XP_032590404.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    B4J6W5
    Related
    XP_032590404.1, XM_032734513.1
    Conserved Domains (1) summary
    cl11394
    Location:168 → 541
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_001987143.2 → XP_001987179.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_001987179.1

    UniProtKB/TrEMBL
    B4J6W5
    Related
    XP_001987179.1, XM_001987143.2
    Conserved Domains (1) summary
    cl11394
    Location:168 → 541
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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