U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tmtc3 Transmembrane O-mannosyltransferase targeting cadherins 3 [ Drosophila grimshawi ]

Gene ID: 6559285, updated on 15-May-2024

Summary

Go to the top of the page Help
Gene symbol
Tmtc3
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
Dgri_GH21177
See related
EnsemblRapid:LOC6559285
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH21177; GH21177-PA
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Tmtc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (8060615..8065551)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961673.1 (4048151..4053087)

NW_025062889.1Genomic Context describing neighboring genes Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 Neighboring gene mago, exon junction complex subunit Neighboring gene Tub domain-containing protein ktub Neighboring gene glycerophosphocholine phosphodiesterase GPCPD1 Neighboring gene potassium channel subfamily K member 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyl-transferase Tmtc3
Names
Dgri\GH21177
Dgri\GH21177-PA
dgri_GLEANR_5362

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062889.1 Reference ASM1815329v1

    Range
    8060615..8065551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001986066.2 → XP_001986102.1  protein O-mannosyl-transferase Tmtc3

    See identical proteins and their annotated locations for XP_001986102.1

    UniProtKB/TrEMBL
    B4J6R6
    Related
    XP_001986102.1, XM_001986066.2
    Conserved Domains (7) summary
    COG0457
    Location:610 → 869
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:631 → 658
    TPR; TPR repeat [structural motif]
    cd15832
    Location:562 → 615
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:698 → 731
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:355 → 428
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:546 → 612
    TPR_11; TPR repeat
    cl24038
    Location:560 → 728
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.