U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pgant6 Polypeptide N-Acetylgalactosaminyltransferase 6 [ Drosophila grimshawi ]

Gene ID: 6557208, updated on 23-May-2024

Summary

Go to the top of the page Help
Gene symbol
Pgant6
Gene description
Polypeptide N-Acetylgalactosaminyltransferase 6
Locus tag
Dgri_GH16989
See related
EnsemblRapid:LOC6557208
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH16989; GH16989-PA
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Pgant6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063240.1 (4218794..4222529, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961672.1 (19319477..19323199)

NW_025063240.1Genomic Context describing neighboring genes Neighboring gene protein spaetzle 5 Neighboring gene Ten-Eleven Translocation (TET) family protein Neighboring gene pyridoxal kinase Neighboring gene mitochondrial ribosomal protein S35

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
N-acetylgalactosaminyltransferase 6
Names
Dgri\GH16989
Dgri\GH16989-PA
dgri_GLEANR_16634

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063240.1 Reference ASM1815329v1

    Range
    4218794..4222529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001985268.3 → XP_001985304.1  N-acetylgalactosaminyltransferase 6

    See identical proteins and their annotated locations for XP_001985304.1

    UniProtKB/TrEMBL
    B4IYH9
    Related
    XP_001985304.1, XM_001985268.3
    Conserved Domains (3) summary
    cd02510
    Location:218 → 517
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:535 → 662
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:533 → 660
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials