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colt carnitine/acylcarnitine carrier protein colt, mitochondrial [ Tribolium castaneum (red flour beetle) ]

Gene ID: 655653, updated on 16-May-2024

Summary

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Gene symbol
colt
Gene description
carnitine/acylcarnitine carrier protein colt, mitochondrial
Locus tag
TcasGA2_TC004690
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See colt in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 10 NC_087403.1 (284775..288237)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LGX NC_007416.3 (166694..170365, complement)

Chromosome 10 - NC_087403.1Genomic Context describing neighboring genes Neighboring gene tubulin polyglutamylase complex subunit 2 Neighboring gene N(alpha)-acetyltransferase 35 Neighboring gene NF-kappa-B-repressing factor Neighboring gene leucine-rich repeats and immunoglobulin-like domains protein 3 Neighboring gene Gelsolin Neighboring gene lysosomal enzyme receptor protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
congested-like trachea protein
Names
AUGUSTUS-3.0.2_04690
GLEAN_04690

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087403.1 Reference icTriCast1.1 Primary Assembly

    Range
    284775..288237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_962216.5 → XP_967309.1  congested-like trachea protein

    See identical proteins and their annotated locations for XP_967309.1

    UniProtKB/TrEMBL
    D6W684
    Conserved Domains (2) summary
    PTZ00169
    Location:10 → 272
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:102 → 198
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein Strain
Heading Accession and Version

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