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LOC6556495 xylosyltransferase oxt [ Drosophila grimshawi ]

Gene ID: 6556495, updated on 10-May-2024

Summary

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Gene symbol
LOC6556495
Gene description
xylosyltransferase oxt
Locus tag
Dgri_GH10790
See related
EnsemblRapid:LOC6556495
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH10790; GH16481; GH10790-PA; GH16481-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6556495 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063240.1 (12292416..12295996, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961672.1 (11298620..11302234)

NW_025063240.1Genomic Context describing neighboring genes Neighboring gene plasma membrane ascorbate-dependent reductase CYBRD1 Neighboring gene Elongator complex protein 5 Neighboring gene ATP-dependent RNA helicase laf-1 Neighboring gene ecdysoneless cell cycle regulator Neighboring gene putative neutral sphingomyelinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase oxt
Names
Dgri\GH10790
Dgri\GH10790-PA
Dgri\GH16481
Dgri\GH16481-PA
dgri_GLEANR_1071
dgri_GLEANR_16175

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063240.1 Reference ASM1815329v1

    Range
    12292416..12295996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001984437.3 → XP_001984473.2  xylosyltransferase oxt

    UniProtKB/TrEMBL
    B4J0I5
    Related
    XP_001984473.2, XM_001984437.3
    Conserved Domains (3) summary
    pfam01822
    Location:144 → 224
    WSC; WSC domain
    pfam12529
    Location:544 → 718
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:257 → 510
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials