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Scgdelta Sarcoglycan delta [ Tribolium castaneum (red flour beetle) ]

Gene ID: 655597, updated on 10-May-2024

Summary

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Gene symbol
Scgdelta
Gene description
Sarcoglycan delta
Locus tag
TcasGA2_TC007505
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 9 NC_087402.1 (3676860..3760351, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG4 NC_007419.2 (3557584..3642325, complement)

Chromosome 9 - NC_087402.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-glycan biosynthesis class X protein Neighboring gene uncharacterized LOC655436 Neighboring gene uncharacterized LOC655519 Neighboring gene uncharacterized LOC107397399 Neighboring gene uncharacterized LOC655761 Neighboring gene proton channel OtopLc

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
AUGUSTUS-3.0.2_32792
GLEAN_07505
Gamma-sarcoglycan-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087402.1 Reference icTriCast1.1 Primary Assembly

    Range
    3676860..3760351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015979509.2 → XP_015834995.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A139WJ89
    Conserved Domains (1) summary
    pfam04790
    Location:108 → 358
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_064358770.1 → XP_064214840.1  gamma-sarcoglycan isoform X2

  3. XM_008193791.3 → XP_008192013.1  gamma-sarcoglycan isoform X2

    See identical proteins and their annotated locations for XP_008192013.1

    Conserved Domains (1) summary
    pfam04790
    Location:35 → 285
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_064358769.1 → XP_064214839.1  gamma-sarcoglycan isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials