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LOC6550405 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila erecta ]

Gene ID: 6550405, updated on 10-May-2024

Summary

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Gene symbol
LOC6550405
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dere_GG18081
See related
EnsemblRapid:LOC6550405
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG18081; GG18081-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6550405 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825209.1 (6813345..6815464, complement)

NW_020825209.1Genomic Context describing neighboring genes Neighboring gene myotrophin Neighboring gene uncharacterized LOC6550473 Neighboring gene Rho GTPase activating protein at 18B Neighboring gene innexin inx5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825209 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dere\GG18081
Dere\GG18081-PA
dere_GLEANR_2952

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825209.1 Reference DereRS2

    Range
    6813345..6815464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001977700.3 → XP_001977736.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    See identical proteins and their annotated locations for XP_001977736.1

    UniProtKB/TrEMBL
    B3NUR6
    Related
    XP_001977736.1, XM_001977700.3
    Conserved Domains (1) summary
    cl21608
    Location:104 → 271
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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