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LOC6550325 irregular chiasm C-roughest protein [ Drosophila erecta ]

Gene ID: 6550325, updated on 10-May-2024

Summary

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Gene symbol
LOC6550325
Gene description
irregular chiasm C-roughest protein
Locus tag
Dere_GG18598
See related
EnsemblRapid:LOC6550325
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG18598; GG18598-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6550325 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825209.1 (1354206..1485397, complement)

NW_020825209.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6550323 Neighboring gene estradiol 17-beta-dehydrogenase 8 Neighboring gene putative uncharacterized protein DDB_G0277255 Neighboring gene kin of irre Neighboring gene neurogenic locus Notch protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825209 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein
Names
Dere\GG18598
Dere\GG18598-PA
dere_GLEANR_3420

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825209.1 Reference DereRS2

    Range
    1354206..1485397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026982491.1 → XP_026838292.1  irregular chiasm C-roughest protein

    UniProtKB/TrEMBL
    B3NTZ2
    Related
    XP_026838292.1, XM_026982491.1
    Conserved Domains (5) summary
    pfam08205
    Location:135 → 225
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:345 → 409
    Ig_3; Immunoglobulin domain
    cd00096
    Location:276 → 336
    Ig; Immunoglobulin domain
    cl11960
    Location:427 → 523
    Ig; Immunoglobulin domain
    cl28434
    Location:29 → 110
    I-set; Immunoglobulin I-set domain

  2. XM_001976737.3 → XP_001976773.1  irregular chiasm C-roughest protein

    See identical proteins and their annotated locations for XP_001976773.1

    UniProtKB/TrEMBL
    B3NTZ2
    Related
    XP_001976773.1, XM_001976737.3
    Conserved Domains (5) summary
    pfam08205
    Location:135 → 225
    C2-set_2; CD80-like C2-set immunoglobulin domain
    pfam13927
    Location:345 → 409
    Ig_3; Immunoglobulin domain
    cd00096
    Location:276 → 336
    Ig; Immunoglobulin domain
    cl11960
    Location:427 → 523
    Ig; Immunoglobulin domain
    cl28434
    Location:29 → 110
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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