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LOC6550240 C-mannosyltransferase dpy-19 homolog [ Drosophila erecta ]

Gene ID: 6550240, updated on 10-May-2024

Summary

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Gene symbol
LOC6550240
Gene description
C-mannosyltransferase dpy-19 homolog
Locus tag
Dere_GG18103
See related
EnsemblRapid:LOC6550240
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG18103; GG18103-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6550240 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825209.1 (6377100..6381004, complement)

NW_020825209.1Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup35 Neighboring gene GID complex subunit 8 homolog protein Houki Neighboring gene Inhibitor of growth family, member 3 Neighboring gene zinc metalloproteinase nas-14 Neighboring gene STKc_STK36 domain-containing protein fused Neighboring gene cytochrome P450 enzyme phantom

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825209 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-mannosyltransferase dpy-19 homolog
Names
Dere\GG18103
Dere\GG18103-PA
dere_GLEANR_2972

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825209.1 Reference DereRS2

    Range
    6377100..6381004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001977655.3 → XP_001977691.1  C-mannosyltransferase dpy-19 homolog isoform X2

    See identical proteins and their annotated locations for XP_001977691.1

    UniProtKB/TrEMBL
    B3NUM1
    Related
    XP_001977691.1, XM_001977655.3
    Conserved Domains (1) summary
    pfam10034
    Location:18 → 844
    Dpy19; Q-cell neuroblast polarization

  2. XM_026982263.1 → XP_026838064.1  C-mannosyltransferase dpy-19 homolog isoform X1

    Related
    XP_026838064.1, XM_026982263.1
    Conserved Domains (2) summary
    pfam10034
    Location:40 → 866
    Dpy19; Q-cell neuroblast polarisation
    cl25758
    Location:453 → 591
    DUF4775; Domain of unknown function (DUF4775)
Nucleotide Protein
Heading Accession and Version

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