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Vha44 V-type proton ATPase subunit Vha44 [ Drosophila erecta ]

Gene ID: 6548683, updated on 15-May-2024

Summary

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Gene symbol
Vha44
Gene description
V-type proton ATPase subunit Vha44
Locus tag
Dere_GG22273
See related
EnsemblRapid:LOC6548683
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG22273; GG22273-PB
Orthologs
fruit fly all
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Genomic context

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See Vha44 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825207.1 (9159556..9170695, complement)

NW_020825207.1Genomic Context describing neighboring genes Neighboring gene NADPH oxidase 5 Neighboring gene inhibitor of Bruton tyrosine kinase Neighboring gene uncharacterized LOC6548528 Neighboring gene transcription factor grauzone Neighboring gene hydroxymethylglutaryl-CoA synthase 1 Neighboring gene alpha-N-acetylgalactosaminidase Neighboring gene nuclear pore glycoprotein p62

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825207 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit C
Names
Dere\GG22273
Dere\GG22273-PB
dere_GLEANR_7018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825207.1 Reference DereRS2

    Range
    9159556..9170695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026980818.1 → XP_026836619.1  V-type proton ATPase subunit C isoform X3

    Related
    XP_026836619.1, XM_026980818.1
    Conserved Domains (2) summary
    cd14785
    Location:57 → 77
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:6 → 374
    V-ATPase_C; V-ATPase subunit C

  2. XM_026980817.1 → XP_026836618.1  V-type proton ATPase subunit C isoform X2

    UniProtKB/TrEMBL
    B3NPJ9
    Related
    XP_026836618.1, XM_026980817.1
    Conserved Domains (3) summary
    cd14785
    Location:488 → 514
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:465 → 740
    V-ATPase_C; V-ATPase subunit C
    cl15414
    Location:6 → 98
    V-ATPase_C; Subunit C of vacuolar H+-ATPase (V-ATPase)

  3. XM_026980815.1 → XP_026836616.1  V-type proton ATPase subunit C isoform X1

    UniProtKB/TrEMBL
    B3NPJ9
    Related
    XP_026836616.1, XM_026980815.1
    Conserved Domains (3) summary
    cd14785
    Location:509 → 535
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:486 → 761
    V-ATPase_C; V-ATPase subunit C
    cl15414
    Location:6 → 98
    V-ATPase_C; Subunit C of vacuolar H+-ATPase (V-ATPase)

  4. XM_026980816.1 → XP_026836617.1  V-type proton ATPase subunit C isoform X1

    UniProtKB/TrEMBL
    B3NPJ9
    Related
    XP_026836617.1, XM_026980816.1
    Conserved Domains (3) summary
    cd14785
    Location:509 → 535
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:486 → 761
    V-ATPase_C; V-ATPase subunit C
    cl15414
    Location:6 → 98
    V-ATPase_C; Subunit C of vacuolar H+-ATPase (V-ATPase)

  5. XM_026980819.1 → XP_026836620.1  V-type proton ATPase subunit C isoform X3

    Related
    XP_026836620.1, XM_026980819.1
    Conserved Domains (2) summary
    cd14785
    Location:57 → 77
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:6 → 374
    V-ATPase_C; V-ATPase subunit C
Nucleotide Protein
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