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FAM138C family with sequence similarity 138 member C [ Homo sapiens (human) ]

Gene ID: 654835, updated on 22-Oct-2024

Summary

Official Symbol
FAM138Cprovided by HGNC
Official Full Name
family with sequence similarity 138 member Cprovided by HGNC
Primary source
HGNC:HGNC:32333
See related
Ensembl:ENSG00000218839 AllianceGenome:HGNC:32333
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
F379
Expression
Low expression observed in reference dataset See more
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Genomic context

See FAM138C in Genome Data Viewer
Location:
9p24.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (34394..35864, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (28530..30000, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (34394..35864, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene DEAD/H-box helicase 11 like 5 (pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:20697-21539 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:21540-22381 Neighboring gene WASH complex subunit 1 Neighboring gene microRNA 1302-9 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:46796-46960 Neighboring gene protein piccolo-like Neighboring gene PGM5P3 antisense RNA 1 Neighboring gene phosphoglucomutase 5 pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chr9:82860-83384 Neighboring gene Sharpr-MPRA regulatory region 4499 Neighboring gene MPRA-validated peak7198 silencer Neighboring gene long intergenic non-protein coding RNA 1388 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19719

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026822.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL449043
    Related
    ENST00000449442.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    34394..35864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    28530..30000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)